Posts Tagged ‘2D Gel Electrophoresis’

Selecting a gel for western blotting

 :: Posted by American Biotechnologist on 10-12-2011

In today’s western blotting tip, we will look at how to select the appropriate gel.

Figure 1: Comparative separation of TGX Any kD acrylamide gel and 4-20% gradient gel. An E. Coli homogenate (20 μg) was separated on both Criterion™ TGX Any kD Stain-Free™ and 4-20% gels at 300V in 18 min, and the total protein content was visualised by Stain-Free detection using the Gel Doc™ EZ imaging system.

For a good separation of a complex mixture of proteins over a wide range of MW, it is usually recommended to use a gel that has a gradient of concentration of acrylamide across its length. Bio-Rad offers, within its new Mini-PROTEAN TGX™ gel line, a special flavour that extends even further the resolution between 10 and 100 kD, where most of the proteins separated in electrophoresis are present. Even with a homogeneous acrylamide %, its special chemistry generates this particular pattern. This Any kD gel represents a good choice for the optimal separation in that range. See in Figure 1 the comparative resolution of an E. Coli homogenate separated in a TGX Any kD and a 4-20% gradient gel. Note that this special gel, like all the TGX gels, has a 12 months shelf life, is compatible with the standard Laemmli Tris-Glycine-SDS running buffer and can run faster down to 10 minutes for the mini format.

Bottom line: unless you require a very tight resolution, your best bet is usually to pick a gradient gel. Why settle for looking at a narrow range of proteins when you can have good separation of many proteins in one gel?

Western Blotting Tutorial Series on American Biotechnologist

 :: Posted by American Biotechnologist on 10-11-2011

SDS-PAGE and western blotting are traditional technologies in most laboratories working with proteins, in order to separate, visualize and identify some proteins within a mixture. A general detection of all the proteins can be done directly within the electrophoretic gel. The most commonly used protein blotting technique, western blotting, was developed as a result of the need to probe for proteins that were inaccessible to antibodies while in polyacrylamide gels. Western blotting involves the transfer of proteins that have been separated by gel electrophoresis onto a membrane, followed by immunological detection of these proteins. Western blotting combines the resolution of gel electrophoresis with the specificity of immunoassays, allowing individual proteins in mixtures to be identified and analyzed.

In the coming days, we will provide you with some helpful tips and tricks for achieving spectacular western blot results.

Did you know that there is an electrophoresis fanclub? To join, visit www.bio-rad.com/miniprotean_fanclub

Improving the statistic significe of your Western Blots

 :: Posted by American Biotechnologist on 09-08-2011

Western Blotting is probably one of the most ubiquitous techniques in the molecular biology lab and relatively easy to perform. Yet many of us have been frustrated with statistically insignificant results or protein bands that appear either too dark or too light to quantitate.

Well, do not despair! There are many things you can do to help improve the quality of your blots and increase your likelihood of obtaining statistically significant results!

In the video below, you will learn about the many factors affecting western blot analysis (such as detection limit and dynamic range limitations of film and overloaded gels) and what can be done to improve your chances of success.

The presentation was given by Bio-Rad Laboratories Field Application Specialist Dr. Sean Taylor as part of an intimate customer training. Some of the references in the presentation may be specific for that particular customer but the general information contained in this presentation is highly valuable to all molecular biology labs.

Still stuck on tank or semi-dry protein blotting?

 :: Posted by American Biotechnologist on 08-17-2011

Learn why the Trans Blot Turbo is faster than tank and semi-dry blotting techniques.

Bio-Rad Video 5/11/11 from Lab Manager Magazine on Vimeo.

Quality controlling 2D gel data and why you should do it

 :: Posted by American Biotechnologist on 05-31-2010

Be sure to check out the upcoming webinar on Wednesday June 9th from our friends at Ludesi.

Learn how to use the free Gel IQ tool to measure the correctness of your image analysis output.

* Introducing you to Combined Correctness: a generic metric for calculating a quality score
* Using the free software tool “Gel IQ” to calculate a quality score on your 2D gel image analysis data
* How to import your analysis project into Gel IQ
* Applying the correct evaluation settings
* Evaluating spot detection and matching correctness
* Interpreting your Combined Correctness score
* Using Gel IQ to quality control and optimize your 2D gel analysis protocols

Wednesday, June 9, 2010
12 PM EDT / 9 AM PDT (US) / 6 PM CET (Europe)
Click here to register for the Wednesday time slot